Welcome to the HPC ReproHack

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# Welcome to the HPC ReproHack <img src='assets/hex-logo-small.png' height=200px>
### Please Sign in on the Hackpad: bit.ly/hpc-reprohack-hackpad

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## Welcome to the 1st ReproHack HPC ReproHack!

### 👋 from the organising team

#### _David Quigley & Anna Krystalli_

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### Event Page: [bit.ly/hpc-reprohack](https://bit.ly/hpc-reprohack)

Contains all event information and links to materials

### <svg viewBox="0 0 512 512" style="height:1em;position:relative;display:inline-block;top:.1em;" xmlns="http://www.w3.org/2000/svg"> <path d="M459.37 151.716c.325 4.548.325 9.097.325 13.645 0 138.72-105.583 298.558-298.558 298.558-59.452 0-114.68-17.219-161.137-47.106 8.447.974 16.568 1.299 25.34 1.299 49.055 0 94.213-16.568 130.274-44.832-46.132-.975-84.792-31.188-98.112-72.772 6.498.974 12.995 1.624 19.818 1.624 9.421 0 18.843-1.3 27.614-3.573-48.081-9.747-84.143-51.98-84.143-102.985v-1.299c13.969 7.797 30.214 12.67 47.431 13.319-28.264-18.843-46.781-51.005-46.781-87.391 0-19.492 5.197-37.36 14.294-52.954 51.655 63.675 129.3 105.258 216.365 109.807-1.624-7.797-2.599-15.918-2.599-24.04 0-57.828 46.782-104.934 104.934-104.934 30.213 0 57.502 12.67 76.67 33.137 23.715-4.548 46.456-13.32 66.599-25.34-7.798 24.366-24.366 44.833-46.132 57.827 21.117-2.273 41.584-8.122 60.426-16.243-14.292 20.791-32.161 39.308-52.628 54.253z"></path></svg> @ReproHack #HPCReproHack

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Welcome everyone on behalf of the organising team, myself and David!

I hope you've signed into the hackpad which has a lot of information, as does our event page. Both links should be in the chat.

If you want to tweet aout today you can tweet at the reprohack project and/or

Let me start with some context into what brings us all here today.

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> # Reprohack:
> #### Sandbox Environment for Practicing Research Reproducibility

> #### One day events using participants' laptops

> #### Traditional format **excludes the examination of the reproducibility of computationally intensive research!**

# Enter the 1st High Performance Computing ReproHack!

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General concept. Authors submit papers with associated code & data and participants try and reproduce the work from submitted materials.

Precludes computationally intensive research. A question we were getting at almost every event so we were keen to address it. So when David got in touch with us about a bid he was preparing and suggesting exactly that we jumped at the opportunity to collaborate.

Which brings us to why we are here today! The 1st HPC reprohack!

This is a pilot and we hope to come up with a blueprint for how to run such events. So what's different:

- Access to HPC cluster!
- Longer format with opportunity to work in your own time
- Mentors

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# Thank you!

## EPSRC for funding

_Grant EP/W032201/1_

## Sulis for Compute Power

### **David Quigley** for securing funding 
### All mentors for papers & support

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I want to take the opportunity upfront to thank the EPSRC for the funding,

Sulis HPC framework for the compute power set aside especially for us

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# Agenda

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OK I'll do a quick blast through the agenda,

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# HPC ReproHack Launch

### 21st March

| Time 	| Event 	|
|---	|---	|
| 10:00 - 10:15 	| **Anna Krystalli:** Welcome, Introduction to event. 	|
| 10:15 - 10:40 	| **Martin Callaghan:** HPC in the age of Data Science 	|
| 10:40 - 11:30 	| **Twin Karmakharm:** Reproducibility on HPC 	|
| 11:30 - 11:45 	| COFFEE 	|
| 11:45 - 12:10 	| **Heather Ratcliffe:** Introduction to Sulis 	|
| 12:10 - 12:35 	| **Mike Croucher:** Reproducible MATLAB on HPC 	|
| 12:35 - 12:55 	| **Mozhgan Kabiri Chimeh:** NVIDIA AI & HPC Containers 	|
| 13:00 - 14:00 	| LUNCH 	|
| 14:00 - 14:20 	| **Anna Krystalli:** Introduction to ReproHacking 	|
| 14:20 - 17:00 	| Initial ReproHack Session 	|

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# HPC ReproHack

### Drop in sessions

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# HPC ReproHack

### Closing sessions

| Date 	| Time 	| Event 	|
|---	|---	|---	|
| 31st March 	| 10:00 - 13:00 	| Closing Event 	|

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In te afternoon, remember to take a coffee break and also submit your reviews by the end of the day.

At 4pm, we'll rejoin to hear from Stephen Eglen on the Code Check project.

We'll close by sharing our final thoughts about the experience followed by some closing remarks.

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# House Keeping:

- ### No fire alarms expected
- ### Water point
- ### Toilets
- ### Code of Conduct <https://reprohack.org/code-of-conduct>

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So some quick housekeeping

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## ReproHack hackpad ➡️   [hackmd.io](https://hackmd.io/s/features) notepad

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As I've mentioned, we're also using a hackpad, specifically a hackmd hackpad. So this pad understands markdown, which is the text shown on the left and it is rendered on the right. If you are not familiar with markdown, don't worry too much, just use it as a plain text editor or you can have a quick look at hack md documentation, there's a link at the top of the hackpad.

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# Ice breaker:  Introductions

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Now we're going to do a quick round of intriductions, and I'll put you in smaller break out groups and there's three questions Id like you to answer.

I'll go first:
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## Who am I?

> ### Dr Anna Krystalli (@annakrystalli)
> 
> - Research Software Engineer _University of Sheffield_
>
> - 2019 Fellow _Software Sustainability Institute_
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> - Software Peer Review Editor _rOpenSci_ 
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> - Core Team Member _ReproHack_

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## Why am I here?

> I believe there's lots to learn about Reproducibility from working with other people's materials and engaging with real published research code and data.

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- I feel very strongly that working with these resources is a really powerful working experience. But also that if we don't engage with the materials, we (the authors who have put all this effort in included) won't really know if they are actually reproducible and therefore fit for purpose.
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## Who is my favorite animated character?

> Stitch!
>
> ![](https://media3.giphy.com/media/95MU6SEzeLnUc/giphy.gif?cid=790b76115d11033236595055776d483b&rid=giphy.gif)

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I think he's cute and my friends think that's who I turn into after I've had a couple of strong ciders!

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# Your turn

### in small groups (5 mins)

> - ### Who are you?

> - ### Why are you here?

> - ### Who is your favorite animated character?

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OK, so it's your turn now, I'm going to put you into break out groups where you'll have 5 minutes to answer these 3 questions amongst yourself.

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## Welcome back!

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# Talks